青天葵HMGR 基因片段的鉴定和生物信息学分析

    Identification and bioinformatics analysis of HMGR gene fragment in Nervilia fordii

    • 摘要: 采用生物信息学对青天葵转录组测序获取的3- 羟基-3- 甲基戊二酰辅酶A 还原酶编码基因片段NfHMGR 及其编码蛋白进行功能鉴定和表达分析。结果表明,NfHMGR 基因片段序列长度为1 563 bp,与其他植物HMGR 基因的同源性最高可达88%;编码含有521 个氨基酸、分子量约为55.34 ku 的亲水性不稳定蛋白。NfHMGR 蛋白具有3- 羟基-3-甲基戊二酰辅酶A 还原酶Ⅰ类酶功能域,归属于3-羟基-3-甲基戊二酰辅酶A 还原酶超级家族,包含3 处跨膜结构域,不含任何信号肽、转运肽,二级结构表现为混合型结构蛋白质。在青天葵不同组织中,NfHMGR 基因在球茎中的表达量高于在叶片中的表达量。

       

      Abstract: A gene fragment of 3-hydroxy-3-methylglutaryl coenzyme A reductase(HMGR)was identified from the transcriptome of Nervilia fordii(Hance)Schltr. and analyzed using bioinformatics. The results showed that NfHMGR embodied 1 563 bases and shared high homology with other plants,which was up to 88%. NfHMGR encoded an unstable and hydrophilic protein that contained 521 amino acids and exhibited a molecular weight of 55.34 ku. NfHMGR protein,which was assigned to 3-hydroxy-3-methylglutaryl coenzyme A reductase superfamily,embraced 3-hydroxy- 3-methylglutaryl coenzyme A reductase Ⅰ functional domain,three transmembrane regions and none signal peptide and transport peptide. Secondary structure prediction revealed NfHMGR was a hybrid protein. And NfHMGR gene expressed higher in corm than in leaf.

       

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