红火蚁几丁质酶基因家族的全基因组鉴定与表达谱分析

    Genome-wide Identification and Expression Profiling of the Chitinase Gene Family in Solenopsis invicta

    • 摘要:
      目的 几丁质酶在昆虫几丁质代谢及生长发育过程中具有关键作用。该研究旨在系统鉴定红火蚁(Solenopsis invicta)几丁质酶基因(Chitinase,Cht)家族成员,分析其分子特征与表达模式,探讨其在红火蚁发育过程中的潜在功能,为基于几丁质代谢靶标的新型绿色防控策略提供理论依据与基因资源。
      方法 基于红火蚁全基因组数据,鉴定几丁质酶基因家族成员; 利用生物信息学方法分析其编码蛋白的理化性质、染色体定位及系统进化关系; 通过RT-qPCR技术检测各基因在红火蚁不同发育阶段(卵、幼虫、蛹、成虫)及不同组织中的表达模式。
      结果 共鉴定到6个红火蚁几丁质酶相关基因,包括5个SiCht基因和1个SiIDGF基因; 其编码蛋白长度介于444~3 050 aa,多数为稳定酸性蛋白; 这些基因分布于5条染色体上,其中SiCht6-1SiCht6-2均位于6号染色体。共线性分析表明该基因家族进化较为保守; 系统进化分析将其划分为7个群。表达谱显示,SiCht1SiCht2SiCht7在卵、幼虫和蛹中高表达,而SiIDGF3在成虫期表达量最高; 组织表达分析进一步发现,SiCht7SiIDGF3在表皮中显著高表达,提示其可能在表皮发育与重塑过程中发挥关键作用。
      结论 该研究成功鉴定出6个红火蚁几丁质酶基因家族成员,其分子特征多样且进化关系保守。表达模式分析结果表明SiCht基因在红火蚁蜕皮与生长发育过程中具有重要作用,其中SiCht7SiIDGF3是潜在的表皮重塑关键靶标。研究结果可为揭示红火蚁入侵性形成的分子机制提供新视角,并为开发针对几丁质代谢的RNAi或抑制剂类绿色防控技术奠定理论基础。

       

      Abstract:
      Objective Chitinases are essential for chitin metabolism and the growth and development of insects. This study systematically identified the chitinase gene family members in the red fire ant (Solenopsis invicta), analyzed their molecular characteristics and expression patterns, and explored their potential functions during development. The findings provide a theoretical basis and genetic resources for novel green control strategies targeting chitin metabolism.
      Method Based on the whole genome data of S. invicta, members of the chitinase gene family were identified. Bioinformatics analysis were performed to characterize the physicochemical properties, chromosomal localization, and phylogenetic relationships of their encoded proteins. The expression patterns of these genes across different developmental stages (egg, larva, pupa, and adult) and in various tissues were further examined using RT-qPCR.
      Result A total of six chitinase genes were identified in S. invicta, including five SiCht genes and one SiIDGF gene. The corresponding encoded proteins exhibited lengths ranging from 444 to 3 050 amino acids, most of which were predicted to be stable and acidic in nature. These genes were distributed across five chromosomes, with SiCht6-1 and SiCht6-2 both located on chromosome 6. Collinearity analysis suggested that the chitinase gene family is evolutionarily conserved, and phylogenetic analysis grouped them into seven distinct clades. Expression profiling revealed that SiCht1, SiCht2, and SiCht7 were predominantly expressed at high levels during eggs, larvae, and pupae stages, whereas SiIDGF3 displayed the highest expression in adults. Tissue-specific expression analysis further demonstrated that SiCht7 and SiIDGF3 were significantly enriched in the epidermis, suggesting their potential key roles in cuticular development and remodeling.
      Conclusion This study successfully identified six members of the chitinase gene family in S. invicta, which exhibit diverse molecular features and evolutionary conservation. Expression patterns suggest that SiCht genes are involved in molting and growth-related processes of S. invicta, with SiCht7 and SiIDGF3 emerging as potential key targets for cuticle remodeling. These findings provide insights into the molecular mechanisms contributing to the invasiveness of S. invicta and provide a theoretical basis for the development of environmentally friendly control strategies, such as RNAi or chitinase inhibitors targeting chitin metabolism.