舞花姜实时荧光定量PCR内参基因筛选

    Screening of Reference Genes for Quantitative Real-time PCR in Globba spp.

    • 摘要:
      目的 筛选适用于不同品种舞花姜苞片及舞花姜‘白龙’不同部位研究试验的稳定内参基因,为后续舞花姜目的基因表达分析研究提供理论依据。
      方法 从前期获得的不同品种舞花姜苞片转录组序列,根据相对表达量稳定性挑选苹果酸脱氢酶(MDH)、肌动蛋白(Actin12)、转录延伸因子(EF1α2)、转录辅助蛋白(TAP46)、微管蛋白β(TUB7)、甘油醛-3-磷酸脱氢酶(GAPDH)的编码基因和18S核糖体RNA(18S rRNA)基因作为候选内参基因。利用9个不同颜色舞花姜品种的苞片和舞花姜‘白龙’的根、叶片、侧芽、苞片和小花5个部位样品作为材料,分别对7个候选内参基因进行实时荧光定量PCR(qRT-PCR),通过BestKeeper、NormFinder和geNorm软件分析评估其作为不同品种舞花姜苞片组织和舞花姜‘白龙’不同部位组织内参基因的表达稳定性。
      结果 7个候选内参基因的PCR产物经凝胶电泳检测显示条带单一清晰,与理论预测片段大小相符,熔解曲线为单一主峰,扩增效率介于92.91%~102.33%,线性相关系数r>0.990,表明引物特异性良好,适用于qRT-PCR试验。在不同品种舞花姜苞片中,Actin12在BestKeeper、NormFinder和geNorm软件程序评估中均排名第一。在舞花姜‘白龙’不同部位中,TAP46在BestKeeper和NormFinder软件的稳定性评估中排名第一,而在geNorm软件程序评估排名第四。
      结论 综合3种软件分析结果表明,Actin12为不同品种舞花姜苞片qRT-PCR试验中最稳定的内参基因,TAP46为舞花姜‘白龙’不同部位qRT-PCR试验中最稳定的内参基因。

       

      Abstract:
      Objective Screening for stable reference genes that are applicable to the study of different varieties of Globba spp. bracts and different tissue parts of G. sherwoodiana 'White Dragon' provides a theoretical foundation for subsequent expression analysis of target genes in Globba spp..
      Method Based on the transcriptome sequences of different varieties of Globba spp. bracts obtained in the preliminary stage, seven genes were selected as candidate reference genes according to their stability of relative expression levels: malate dehydrogenase (MDH), actin (Actin12), transcription elongation factor (EF1α2), transcriptional coactivator (TAP46), tubulin β (TUB7), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) encoding genes, and 18S ribosomal RNA gene (18S rRNA). qRT-PCR assays were carried out to assess the expression levels of seven candidate internal reference genes, utilizing bract tissues from nine color-varied varieties of Globba spp. and samples from five distinct plant parts (roots, leaves, lateral buds, bracts, and small flowers) of the G. sherwoodiana 'White Dragon'. The expression stability of these genes as internal references in bract tissues across different varieties of Globba spp. and in various plant parts of G. sherwoodiana 'White Dragon' was evaluated using BestKeeper, NormFinder, and geNorm software.
      Result The PCR products of the seven candidate reference genes exhibited single and distinct bands following gel electrophoresis, with sizes consistent with the theoretically predicted fragment lengths. The melting curves displayed single peaks, and the amplification efficiencies ranged from 92.91% to 102.33%. The linear correlation coefficients (r) were all greater than 0.990, confirming the high specificity of the primers and their suitability for qRT-PCR experiments. In the reference gene screening conducted in the bracts of different Globba spp. varieties, Actin12 was ranked first according to evaluations by BestKeeper, NormFinder, and geNorm software. In the screening of reference genes across different tissue parts of G. sherwoodiana 'White Dragon', TAP46 was ranked first in stability assessments by BestKeeper and NormFinder software but placed fourth according to geNorm software.
      Conclusion The comprehensive analysis results from the three software suggest that Actin12 is the most stable reference gene for qRT-PCR experiments involving bracts across different varieties of Globba spp., while TAP46 is the most stable reference gene for qRT-PCR experiments targeting different parts of G. sherwoodiana 'White Dragon'.