基于垂体转录组测序筛选康乐黄鸡开产性状相关基因和信号通路

    Pituitary Transcriptome Analysis of Genes and Pathways Related to Traits at the First Egg in Kangle Yellow Chicken

    • 摘要:
      目的 运用转录组测序技术深度剖析154日龄已开产与未开产康乐黄鸡垂体转录组表达谱差异,旨在筛选垂体中与开产性状紧密关联的基因及信号通路。
      方法 采用Illumina NovaSeq 6000测序平台,对154日龄康乐黄鸡已开产和未开产个体的垂体组织进行转录组测序,对筛选出的差异表达基因进行功能注释和蛋白网络互作分析,并利用RT-qPCR技术验证基因表达水平。
      结果 两组样品中共获得21 168 713~23 657 558个Clean reads,检测到23 447个基因在垂体组织中表达,其中分类为6大垂体细胞簇的标记基因共282个。通过筛选共获得119个基因在已开产与未开产个体间呈显著差异表达,具体表现为46个基因上调表达、73个基因下调表达,且TRPC4TYRP1分别为上、下调差异倍数最大的基因。GO功能富集分析显示,差异表达基因主要富集在管发育、心脏发育、膜的整体成分和核苷酸结合等生物过程。KEGG通路富集分析发现,差异表达基因显著富集于吞噬体、细胞衰老、细胞黏附分子、内吞作用和单纯疱疹病毒1型感染等信号通路。蛋白互作分析表明,119个差异表达基因中有14个基因存在互作关系,其中EPHA10、OVCH1和FGB为互作网络中的核心蛋白。综合分析,鉴定到12个开产性状相关重要候选基因,分别为POMCCHGAGRPGHCGAPRLCST3CARTPTTRPC4PRKAA2HTR1BIGFBP5。RT-qPCR验证结果显示,其中7个基因表达量变化趋势与转录组测序结果一致。
      结论 通过分析康乐黄鸡垂体组织转录组测序结果,筛选出12个开产相关候选基因、8条关键基因通路,为深入探究鸡垂体组织基因调控开产性状的分子机制提供坚实的数据支持。

       

      Abstract:
      Objective This study focus on Kangle yellow chickens, using transcriptome sequencing technology to deeply analyze the differences in pituitary transcriptome expression profiles of laying and pre-laying individuals at 154 days of age, aiming to screen the genes and signal pathways closely related to laying traits in the pituitary gland.
      Method Transcriptomic sequencing was performed on the pituitary tissues of 154-day-old Kangle yellow chickens using Illumian NovaSeq6000 sequencing platform. Functional annotation and protein network interaction analysis were performed on the selected differentially expressed genes, and RT-qPCR was used to validate gene expression levels.
      Result From 21 168 713 to 23 657 558 clean reads were obtained from both samples, and 23 447 genes were detected as expressed in pituitary tissue, including 222 marker genes classified as 8 large pituitary cell clusters. A total of 119 genes were obtained by screening and showed significant differential expression between laying and pre-laying Kangle yellow chickens, with 46 genes downregulated, and TRPC4 and TYRP1 were the genes with the highest upper and downregulation differences, respectively. GO functional enrichment analysis showed that the differentially expressed genes were mainly enriched in tube development, heart development, overall components of the membrane and nucleotide binding, etc. KEGG pathway enrichment analysis found that the differentially expressed genes were significantly enriched in signaling pathways including phagosomes, cellular senescence, cell adhesion molecules, endocytosis, and herpes simplex virus type 1 infection. Protein interaction analysis identified 14 of 119 differentially expressed genes with EPHA10, OVCH 1 and FGB as core proteins in the interaction network. By comprehensive analysis, 12 important candidate genes related to open birth traits were identified, namely POMC, CHGA, GRP, GH, CGA, PRL, CST3, CARTPT, TRPC4, PRKAA2, HTR1B and IGFBP5. RT-qPCR result showed that the expression trend of seven genes were consistent with transcriptome sequencing.
      Conclusion By analyzing the transcriptome sequencing results of the pituitary tissue of Kangle yellow Chicken, 12 candidate genes and 8 key gene pathways were screened, which provided solid data support for further exploring the molecular mechanism of regulating laying traits by the pituitary tissue genes in chicken.

       

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