花生PLATZ基因家族鉴定及其在盐胁迫和干旱胁迫下的表达分析

    Identification of the PLATZ Gene Family in Peanut and Its Expression Analysis under Salt Stress and Drought Stress

    • 摘要:
      目的 植物AT富集蛋白和锌结合蛋白(PLATZ)是一种特定于植物的依赖锌的DNA结合蛋白,参与调控植物生长和环境胁迫反应的过程。为明确花生(Arachis hypogaea)中PLATZ家族成员的特征,该研究对花生PLATZ基因家族成员进行筛选和表达分析。
      方法 使用花生基因组数据鉴定花生中PLATZ基因家族成员,利用生物信息学方法系统分析其基因家族成员的蛋白理化性质、系统发育树、蛋白保守基序、顺式作用元件、蛋白互作,通过RT-qPCR分析花生PLATZ基因在盐胁迫和干旱胁迫下的表达模式。
      结果 花生中共有13个AhPLATZ基因,不均匀地分布在花生的7条染色体上。AhPLATZ蛋白的氨基酸数量在194~260,分子质量在22.00~29.49 kD,不稳定指数在43.42~73.46,脂肪族指数在47.46~83.92,蛋白亲水性在-1.094~-0.345,均属于亲水蛋白,主要定位在细胞核和叶绿体上。AhPLATZ基因根据系统发育关系将其分为4组,同组的AhPLATZ基因具有相似的基序组成、外显子或内含子数量。共线性结果表明,AhPLATZ基因在分化后通过基因复制实现成员扩张。此外,AhPLATZ的启动子区域含多种顺式作用元件,包括与胁迫反应和激素相关的顺式作用元件。RT-qPCR分析结果表明,AhPLATZ4AhPLATZ5AhPLATZ11在盐胁迫下表达显著诱导,同时AhPLATZ4AhPLATZ5积极响应干旱胁迫。
      结论 从花生中共鉴定出13个PLATZ基因家族成员,其中AhPLATZ4AhPLATZ5积极响应盐胁迫和干旱胁迫。研究结果可为进一步研究AhPLATZ基因功能奠定基础。

       

      Abstract:
      Objective Plant AT-rich sequence and zinc-binding (PLATZ) transcription factors are plant-specific, zinc-dependent DNA-binding proteins that play a role in regulating plant growth and environmental stress responses. To clarify the characteristics of the PLATZ family members in peanut (Arachis hypogaea), this study screened and analyzed the expression of the identified PLATZ gene family members in peanut.
      Method Using peanut genome data, the PLATZ gene family members in peanut were identified, and bioinformatics methods were used to systematically analyze the physicochemical properties, phylogenetic trees, protein conservative motifs, cis-acting elements, and protein interactions of this gene family members. And the expression patterns of peanut PLATZ genes under salt and drought stress were analyzed using RT-qPCR.
      Result A total of 13 AhPLATZ genes were identified in peanuts, which are unevenly distributed across 7 chromosomes. The AhPLATZ proteins range from 194 to 260 amino acids in length, with molecular weights between 22.00 and 29.49 kD, instability indices between 43.42 and 73.46, aliphatic indices between 47.46 and 83.92, and protein hydrophilicity between-1.094 and-0.345, indicating that they are all hydrophilic proteins. The AhPLATZ proteins are primarily localized in the nucleus and chloroplasts. Based on phylogenetic relationships, the AhPLATZ genes were categorized into 4 groups, with genes within the same group typically having similar motif compositions and numbers of exons or introns. The collinearity results suggest that the expansion of AhPLATZ gene members was achieved through gene duplication after diversification. Additionally, the promoter regions of AhPLATZ include various cis-acting elements associated with stress response and hormone regulation. The results of the RT-qPCR analysis indicate that AhPLATZ4, AhPLATZ5, and AhPLATZ11 exhibit significantly induced expression under salt stress, while AhPLATZ4 and AhPLATZ5 actively respond to drought stress.
      Conclusion Thirteen members of the PLATZ gene family have been identified in peanuts, among which AhPLATZ4 and AhPLATZ5 actively respond to both salt stress and drought stress. These findings provide a basis for further functional investigations of the AhPLATZ genes in peanuts.

       

    /

    返回文章
    返回