鹅Caspase-1 基因的克隆与序列分析
Cloning and sequence analysis of Caspase-1 gene in Chinese goose
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摘要: 为系统了解鹅炎症系统,用Trizol 法提取马岗鹅脾脏总RNA,采用兼并引物RT-PCR 方法克隆了马岗鹅Caspase-1 基因并进行了系统的生物信息学分析。测序结果显示,go-Caspase-1 基因完整ORF区长813 bp,编码270 个氨基酸(GenBank 序列号为MG463109)。同源性分析显示,go-Caspase-1 基因序列与鸭、鸡等禽类的同源性较高,与其他物种的差异较大。蛋白质功能结构域分析显示,不同物种间Caspase-1 蛋白的Caspase 结构域高度相似。蛋白三维结构预测比较显示,go-Caspase-1 蛋白空间结构与鸡和人的Caspase-1 主体结构相似。Abstract: In order to systematically understand the inflammatory system of goose,the total RNA was extracted from the spleen of Magang goose by Trizol method. The caspase-1 gene of goose was cloned by RT-PCR and the bioinformatics analysis was carried out. Sequencing results showed that the complete ORF region of the go-Caspase-1 gene was 813 bp,encoding 270 amino acids( GenBank ID NO:MG463109). Homology analysis showed that the sequence of go-Caspase-1 was homologous to duck and chicken,and its differences with other species were relatively large. Protein functional domain analysis showed that the number and distribution of Caspase-1 protein domains were similar in different species. The three-dimensional structure of protein showed that the structure of go-Caspase-1 was similar to that of chicken and human Caspase-1.