一个预测的木薯衰老相关基因的获得及其功能分析

    Obtaining and function analysis of predicted senescence-associated gene from cassava

    • 摘要: 根据水稻LRR 类抗病基因Xa21 的保守结构域设计1 对简并引物,提取木薯抗/ 感细菌性萎蔫病种质E1340 和GR911 的基因组DNA 为模板,通过PCR 扩增均获得大小约0.5 kb 的扩增片段。两个片段克隆、测序后获得完全一致的474 nt 序列,比对发现木薯种质AM560 带有与该序列高度同源的核苷酸片段。提取包括同源片段上下游各约2.2 kb 的大片段序列进行基因预测,发现该片段位于1 个预测基因内,命名为SLR1。该预测基因ORF 全长1 641 nt,编码546 aa,与已报道的衰老相关蛋白具有较高的同源性,可能在木薯衰老相关反应中发挥重要作用。

       

      Abstract: One pair of degenerated primers was designed based on the conserved domain of resistance gene Xa21,which had LRR-liked domain and came from rice. The genome DNA of cassava germplasm E1340 and GR911 was extracted and used as template,which was resistant and susceptible to cassava bacterial blight separately. Two products of about 0.5 kb were obtained by PCR reaction. These two products were purified,cloned and sequenced, and then the same sequences of 474 nt were got. This sequence was highly matched with the homology segment anchored on the genome of cassava germplasm AM560. The long segment including each about 2.2 kb sequences from upstream and downstream of the homology segment was obtained,then one gene was predicted and named SLR1. Sequence analysis results of SLR1 showed that the ORF included 1 641 nucleotides encoding 546 amino acids. This predicted protein was higher consistent with senescence-associated protein reported,may play an important role in senescence mechanism of cassava.

       

    /

    返回文章
    返回